Ahlawat, Y.S. 1997. Viruses, greening, bacterium and viroids associated with citrus (Citrus species) decline in India. Indian J Agric Sci. 67:51-57.
Bastianel, C., Garnier-Semancik, M., Renaudin, J., Bové, J.M. and Eveillard, S. 2005. Diversity of “
Candidatus Liberibacter asiaticus,” based on the
omp gene sequence.
Appl Environ Microbiol. 71:6473-6478.
Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences.
Nucleic Acids Res. 27:573-580.
Bichara, M., Wagner, J. and Lambert, I.B. 2006. Mechanisms of tandem repeat instability in bacteria.
Mutat Res. 598:144-163.
Boles, B.R., Thoendel, M. and Singh, P.K. 2004. Self-generated diversity produces “insurance effects” in biofilm communities.
Proc Natl Acad Sci U S A. 101:16630-16635.
Bové, J.M. 2006. Huanglongbing: a destructive, newly-emerging, century-old disease of citrus. J Plant Pathol. 88:7-37.
Brown, S.E., Oberheim, A.P., Barret, A. and McLaughlin, W.A. 2011. First report of ‘
Candidatus Liberibacter asiaticus’ associated with huanglongbing in the weeds
Cleome rutidosperma,
Pisonia aculeata and
Trichostigma octandrum in Jamaica.
New Dis Rep. 24:25
Capoor, S.P. 1963. Decline of citrus tree in India. Bull Natl Inst Sci India. 24:48-64.
Capoor, S.P., Rao, D.G. and Viswanath, S.M. 1967. Diaphorina citri Kuway: a vector of the greening disease of citrus in India. Indian J Agric Sci. 37:572-576.
Chen, J., Deng, X., Sun, X., Jones, D., Irey, M. and Civerolo, E. 2010. Guangdong and Florida populations of ‘
Candidatus Liberibacter asiaticus’ distinguished by a genomic locus with short tandem repeats.
Phytopathology. 100:567-572.
Coletta-Filho, H.D., Targon, M.L.P.N., Takita, M.A., De Negri, J.D., Pompeu, J. Jr., Marchado, M.A., do Amaral, A.M. and Muller, G.W. 2004. First report of the causal agent of Huanglongbing (“
Candidatus Liberibacter asiaticus”) in Brazil.
Plant Dis. 88:1382
Datar, V.V., Chavan, V., Verma, R., Mungekar, D., Gaikwad, P. and Tripathi, S. 2014. Survey and identification of citrus greening bacterium from multiple locations in Maharashtra. J Plant Dis Sci. 9:60-63.
Deng, X., Chen, J. and Li, H. 2008. Sequestering from host and characterization of sequence of a ribosomal RNA operon (
rrn) from “
Candidatus Liberibacter asiaticus”.
Mol Cell Probes. 22:338-340.
Duan, Y., Zhou, L., Hall, D.G., Li, W., Doddapaneni, H., Lin, H., Liu, L., Vahling, C.M., Gabriel, D.W., Williams, K.P., Dickerman, A., Sun, Y. and Gottwald, T. 2009. Complete genome sequence of citrus huanglongbing bacterium, ‘
Candidatus Liberibacter asiaticus’ obtained through metagenomics.
Mol Plant-Microbe Interact. 22:1011-1020.
Ghosh, D.K., Bhose, S., Motghare, M., Warghane, A., Mukherjee, K., Ghosh, D.K. Sr., Sharma, A.K., Ladaniya, M.S. and Gowda, S. 2015. Genetic diversity of the Indian populations of ‘
Candidatus Liberibacter asiaticus’ based on the tandem repeat variability in a genomic locus.
Phytopathology. 105:1043-1049.
Gomez, K.A. and Gomez, A.A. 1984. Statistical procedures for agricultural research. 2nd ed. John Wiley and Sons, New York, NY, USA. 680.
Halbert, S.E. 2005. In: The discovery of huanglongbing in Florida, In: Proceedings of the 2nd International Citrus Canker and Huanglongbing Research Workshop; eds. by In : T.R. Gottwald, W.N. Dixon, J.H. Graham and P. Berger, 1-3. Florida Citrus Mutual, Orlando FL, USA.
Halbert, S.E. and Manjunath, K.L. 2004. Asian citrus psyllids (Sternorrhyncha: Psyllidae) and greening disease of citrus: a literature review and assessment of risk in Florida.
Fla Entomol. 87:330-353.
Hocquellet, A., Toorawa, P., Bové, J.M. and Garnier, M. 1999. Detection and identification of the two
Candidatus Liberobacter species associated with citrus huanglongbing by PCR amplification of ribosomal protein genes of the β operon.
Mol Cell Probes. 13:373-379.
Jagoueix, S., Bove, J.M. and Garnier, M. 1994. The phloem-limited bacterium of greening disease of citrus is a member of the α subdivision of the
Proteobacteria.
Int J Syst Bacteriol. 44:379-386.
Katoh, H., Subandiyah, S., Tomimura, K., Okuda, M., Su, H.-J. and Iwanami, T. 2011. Differentiation of “
Candidatus Liberibacter asiaticus” isolates by variable-number tandem-repeat analysis.
Appl Environ Microbiol. 77:1910-1917.
Lin, H., Civerolo, E.L., Hu, R., Barros, S., Francis, M. and Walker, M.A. 2005. Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of
Xylella fastidiosa.
Appl Environ Microbiol. 71:4888-4892.
Lindstedt, B.A. 2005. Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria.
Electrophoresis. 26:2567-x2582.
Liu, R., Zhang, P., Pu, X., Xing, X., Chen, J. and Deng, X. 2011. Analysis of a prophage gene frequency revealed population variation of ‘
Candidatus Liberibacter asiaticus’ from two citrus-growing provinces in China.
Plant Dis. 95:431-435.
Ma, W., Liang, M., Guan, L., Xu, M., Wen, X., Deng, X. and Chen, J. 2014. Population structures of ‘
Candidatus Liberibacter asiaticus’ in southern China.
Phytopathology. 104:158-162.
Manjunath, K.L., Ramadugu, C., Majil, V.M., Williams, S., Irey, M. and Lee, R.F. 2010. First report of the citrus Huanglongbing associated bacterium ‘
Candidatus Liberibacter asiaticus’ from sweet orange, Mexican lime, and Asian citrus psyllid in Belize.
Plant Dis. 94:781
Martínez, Y., Llauger, R., Batista, L., Luis, M., Iglesia, A., Collazo, C., Peña, I., Casín, J.C., Cueto, J. and Tablada, L.M. 2009. First report of ‘
Candidatus Liberibacter asiaticus’ associated with Huanglongbing in Cuba.
Plant Pathol. 58:389
Matos, L., Hilf, M.E. and Camejo, J. 2009. First report of ‘
Candidatus Liberibacter asiaticus’ associated with citrus huanglongbing in the Dominican Republic.
Plant Dis. 93:668
Meena, R.P. and Baranwal, V.K. 2016. Development of multiplex polymerase chain reaction assay for simultaneous detection of clostero-, badna- and mandari-viruses along with huanglongbing bacterium in citrus trees.
J Virol Methods. 235:58-64.
Miyakawa, T. and Tsuno, K. 1989 Occurrence of citrus greening disease in the southern islands of Japan.
Ann Phytopathol Soc Jpn. 55:667-670 (In Japanese).
Moxon, E.R., Rainey, P.B., Nowak, M.A. and Lenski, R.E. 1994. Adaptive evolution of highly mutable loci in pathogenic bacteria.
Curr Biol. 4:24-33.
Nei, M. 1973. Analysis of gene diversity in subdivided populations.
Proc Natl Acad Sci U S A. 70:3321-3323.
Oberholzer, P.C.J., von Standen, D.F.A. and Basson, W.J. 1965. In: Greening disease of sweet orange in South Africa, In: Proceedings of the 3rd Conference of the International Organization of Citrus Virologists; eds. by In : W.C. Price, 213-219. University of Florida Press, Gainesville, FL, USA.
Razin, S., Yogev, D. and Naot, Y. 1998. Molecular biology and pathogenicity of mycoplasmas.
Microbiol Mol Biol Rev. 62:1094-1156.
Texeira, D.C., Ayres, J., Kitajima, E.W., Danet, L., Jagoueix-Eveillard, S., Saillard, C. and Bové, J.M. 2005. First report of a huanglongbing like disease of citrus in São Paulo State, Brazil, and association of a new Liberibacter species, ‘
Candidatus Liberibacter americanus’, with the disease.
Plant Dis. 89:107
Tomimura, K., Miyata, S.-I., Furuya, N., Kubota, K., Okuda, M., Subandiyah, S., Hung, T.-H., Su, H.-J. and Iwanami, T. 2009. Evaluation of genetic diversity among ‘
Candidatus Liberibacter asiaticus’ isolates collected in Southeast Asia.
Phytopathology. 99:1062-1069.
van Belkum, A., Scherer, S., van Alphen, L. and Verbrugh, H. 1998. Short-sequence DNA repeats in prokaryotic genomes.
Microbiol Mol Biol Rev. 62:275-293.
Verstrepen, K.J., Jansen, A., Lewitter, F. and Fink, G.R. 2005. Intragenic tandem repeats generate functional variability.
Nat Genet. 37:986-990.
Zhang, S., Flores-Cruz, Z., Zhou, L., Kang, B.-H., Fleites, L.A., Gooch, M.D., Wulff, N.A., Davis, M.J., Duan, Y.-P. and Gabriel, D.W. 2011. “
Ca. Liberibacter asiaticus’ carries an excision plasmid prophage and a chromosomally integrated prophage that becomes lytic in plant infections.
Mol Plant Microbe Interact. 24:458-468.
Zhou, K., Aertsen, A. and Michiels, C.W. 2014. The role of variable DNA tandem repeats in bacterial adaptation.
FEMS Microbiol Rev. 38:119-141.